Journal Entry

Science Update

Last night we traveled from the Bransfield Strait in the Antarctic Sound to reach sampling stations in the Weddell Sea. The Antarctic Sound is also known as "Iceberg Alley" because the mountains surrounding the sound area are covered with ice sheets and glaciers. Icebergs regularly break off of these ice features and float freely in the waters of the sound.

Large ice shelf in Antarctica SoundThis large ice shelf in Antarctica Sound could be the origin of many of the icebergs that give this location its nickname 'Iceberg Alley'. Scenic view of Antarctica SoundSmaller icebergs and bergy bits (small floating ice pieces) float through Antarctica Sound.

The Weddell Sea is on the eastern side of the Antarctic Peninsula and is an area known for deep water and lots of ice. The Weddell Sea was discovered in 1823 by James Weddell. Is was originally named George IV Sea, but was changed in 1900 to honor Weddell. The Weddell Sea is also the location where Sir Ernest Shackleton found his ship, the Endurance trapped in pack ice for months before being destroyed. Thankfully, we did not experience the same amount of ice and made it to our sampling station without incident. We spent the morning filtering samples from Day 7 of the incubation experiment and used the rosettes to sample seawater at this station in the afternoon.

The Iron Story Continued

In yesterday's journal, I introduced the chemical oceanography concepts related to this research cruise. I did not, however, give you the full story. There is more to being a diatom here in the Southern Ocean. Not only are you living in an area historically known for low concentrations of iron, you are also living in water. Confused?? So was I until I learned more about the two different forms of iron found in ocean water. Without going into too much detail, iron can exist in oxygenated water in two different oxidation states: Fe(II) and Fe(III). Due to the non-acidic, oxygenated state of the seawater, most of the iron is in the form of Fe(III). This is a problem for diatoms (and other microscopic organisms) because Fe(III) in non-soluble. This means that organisms can not easily take in Fe(III) when it is in water. The Fe(III) usually falls to the deeper parts of the ocean and is, therefore, unavailable for diatoms to use for photosynthesis. So, not only is there a limited amount of iron, there is a limited amount of the type of iron/Fe(II) that diatoms can use. It sounds like the makings for a soap-opera if you ask me! But wait! There is a way for diatoms to use the Fe(III) - and here's where the biology saves the day!

Ligands to the Rescue

There are biological molecules called ligands that have parts (functional groups) that bind to metal to form what scientists refer to as a complex. When these ligands and metals combine, the process is known as chelating (pronounced key-lating). The combination of a ligand and a metal can sometimes change the properties of the metal. Iron chelating compounds called siderophores are found in bacteria, fungi and grasses. These siderophores have an affinity (attraction) to Fe(III). When they combine, the Fe(III) becomes a soluble form that can be used by organisms. In the diagram below, the green and yellow lines represent the ligand molecules. The greenish-tan organisms are diatoms and the blue ovals are bacteria. Some of the Fe(III) is not associated with ligands and is sinking to the bottom. The other Fe(III) is bound to ligands and is now available for use. You may notice, however, that diatoms do not have ligands. Even though they have a high iron requirement, diatoms do not produce siderophores of their own.

Ligand diagramThe yellow and green 'molecules' in the picture represent siderophores. These siderophores bind to Fe(III) creating a complex that can be used by organisms.

Scientists hypothesize that diatoms and the bacteria have a synergy (relationship) that benefits both organism. The diatoms are able to use the Fe(III) bound to ligands on the bacteria's membrane and the bacteria receive nutrients from the diatoms. All of the scientists on this research cruise are interested in studying the ligands present in the Southern Ocean. Whether from the chemical or biological angle, the science team is interested in learning more about this synergistic relationship and how the diatoms are acquiring iron necessary for photosynthesis.

The Great Debate

To wrap up today's journal, I am looking for help to try and determine an answer to tonight's great debate. During an amazing sunset photography session in Duse Bay, many crew members and science team members photographed a cloud with a distinct glow - like an iridescence. No other cloud in the sky had the same coloration. After some recent and extensive conversations, we have decided that the cloud is one of two types: a lenticular cloud or a nacreous cloud. The problem is - no one on board is experienced enough to know for sure. Do you have an answer? Do you know someone who could help end the great debate? Add your thoughts to the comments or forward this journal to someone who may know. There are a number of folks aboard the RVIB Palmer that would appreciate your help!

Lenticular or nacreousThe bright white cloud in the upper left hand portion of the picture was seen by the RVIB Palmer crew on September 20th. The question remains whether this cloud is a lenticular cloud or a nacreous cloud.

Comments

Vivian Tran

Hi Mrs. Pekarcik. I have a question about the bacteria and the diatoms' relationship. So, the bacteria have siderophores that can attract Fe(III). But how are the diatoms able to get the Fe(III) from the bacteria without siderophores? Is the bacteria a source of food for the diatoms? Also, I downloaded some pictures of a lenticular cloud and a nacreous cloud. I think that it looks more like a lenticular cloud because nacreous clouds have more colors to them. I may be incorrect, so maybe you need to depend on someone else who knows the right answer.

Cara Pekarcik

Hi Vivian - thank you for the questions! The questions that you ask are the still being studied by scientists - including some from this
research cruise. It is still unclear exactly how the diatoms are
acquiring this Fe(III), so more studies are needed. Samples collected
from this research cruise will be used to help identify the types of
siderophores (and other ligands) in the waters as well as learn more
about how iron is used by the diatoms and the bacteria. It may be a
while before this question is really answered.

On 2016-09-21 10:41, PolarTREC wrote:

Reina C, Block B

Hi, Mrs. Pekarcik. The photo of the mountain sillouette and the clouds is just stunning. I didn't know you could see that type of beauty in Antartica. Anyway, I read your journal and learned ligands were biological molecules. I thought to myself: that means they are alive. Is there a purpose to chelate, and/or is it part of a process they go through to survive?

Jeffrey Diep (…

Hello Mrs. Pekarcik, I was just wondering if the ligands are part of a microorganism and then chelate to become siderophores or are they like small organic material that is floating adrift in the sea.

Cara Pekarcik

Hi Reina - careful - the term molecule simply means certain atoms bonded in a certain way. Biological molecules can help to build cells,
tissues, etc., but they do not have all of the characteristics of life.
For instance, biological molecules may not have their own metabolism
(chemical reactions), but they may aid the chemical reactions of a
living things. This is similar to how proteins, carbohydrates, lipids
and nucleic acids are biological macromolecules. They can help to build
structures like muscle (proteins), cell membranes (lipids) and starch
(carbohydrates). These molecules on their own are not living things.

The term chelating simply describes the process of the molecules
bonding to the iron. It is a term used to describe the action of the
bonding process.

On 2016-09-23 13:24, PolarTREC wrote:

Cara Pekarcik

Hi Jeffrey -There are a few things to comment on here:
1. Siderophores are a type of ligand. Siderophores are ligands that
specifically bind to iron. Heme is a siderophore in our red blood cells
that binds iron so that oxygen can be carried throughout of circulatory
system. There are other types of ligands that bind to other types of
metals.

Siderophores can actually be both free swimming and part of a
microorganism. As you might notice in the diagram of this journal, the
yellow ligands are actually attached to the bacteria. These are ligands
that are produced by the bacteria (produced by instructions on their
genes). Scientists are still trying to determine where the free
swimming ligands actually come from. This is yet another unanswered
question that oceanographers continue to study.

On 2016-09-23 14:26, PolarTREC wrote:

Aidan M, Block B

Hi, Mrs. Pekarcik,Hope your having a great time in the Arctic, my question is what time does the sun usually set where you are? The sunset was so beautiful it would just be interesting to know. See you soon!!!

Cara Pekarcik

Hi Aidan - First, remember, I am in Antarctica :) The sun rises around 7am and sets around 7pm - we have about 12 hours of light right now.

On 2016-09-23 15:35, PolarTREC wrote:

Alanna Sweeney…

how long do the samples stay in the incubation

Cara Pekarcik

Hey Alanna - check out the journals on Incubations and you will find information on the set-up of the experiments. Most incubations last 12
days.

On 2016-09-26 06:58, PolarTREC wrote: